J3_5JUU_005
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_005 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1829
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JUU|1|A|C|1161
5JUU|1|A|C|1162
5JUU|1|A|A|1163
5JUU|1|A|G|1164
*
5JUU|1|A|C|1581
5JUU|1|A|U|1582
5JUU|1|A|A|1583
5JUU|1|A|G|1584
5JUU|1|A|U|1585
5JUU|1|A|A|1586
5JUU|1|A|A|1587
*
5JUU|1|A|U|1609
5JUU|1|A|G|1610
5JUU|1|A|A|1611
5JUU|1|A|U|1612
5JUU|1|A|U|1613
5JUU|1|A|A|1614
5JUU|1|A|C|1615
5JUU|1|A|G|1616
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain CB
- uS7 (yeast S5)
- Chain NB
- uS9 (yeast S16)
- Chain ZB
- eS28 (yeast S28)
Coloring options: