J3_5JVH_006

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5JVH|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0603

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|C|1319
5JVH|1|X|A|1320
5JVH|1|X|A|1321
5JVH|1|X|G|1322
*
5JVH|1|X|C|1621
5JVH|1|X|G|1622
5JVH|1|X|C|1623
5JVH|1|X|A|1624
5JVH|1|X|A|1625
5JVH|1|X|A|1626
5JVH|1|X|C|1627
*
5JVH|1|X|G|1636
5JVH|1|X|U|1637
5JVH|1|X|G|1638

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34