J3_5JVH_009

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_009 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1356

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5JVH|1|X|U|2074
5JVH|1|X|U|2075
5JVH|1|X|G|2076
*
5JVH|1|X|C|2179
5JVH|1|X|U|2180
5JVH|1|X|A|2181
5JVH|1|X|A|2182
5JVH|1|X|C|2183
*
5JVH|1|X|G|2202
5JVH|1|X|G|2203
5JVH|1|X|A|2204
5JVH|1|X|C|2205
5JVH|1|X|C|2206
5JVH|1|X|G|2207

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28