J3_5JVH_013
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UC*GUUAAG*CAUCA
- Length
- 13 nucleotides
- Bulged bases
- 5JVH|1|X|U|2808, 5JVH|1|X|A|2810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JVH_013 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.1112
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JVH|1|X|U|2789
5JVH|1|X|C|2790
*
5JVH|1|X|G|2806
5JVH|1|X|U|2807
5JVH|1|X|U|2808
5JVH|1|X|A|2809
5JVH|1|X|A|2810
5JVH|1|X|G|2811
*
5JVH|1|X|C|2857
5JVH|1|X|A|2858
5JVH|1|X|U|2859
5JVH|1|X|C|2860
5JVH|1|X|A|2861
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
- Chain Z
- 50S ribosomal protein L32
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