J3_5JVH_021

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5JVH|1|X|A|2497, 5JVH|1|X|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_021 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.0731

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|C|2496
5JVH|1|X|A|2497
5JVH|1|X|U|2498
5JVH|1|X|C|2499
*
5JVH|1|X|G|2524
5JVH|1|X|U|2525
5JVH|1|X|U|2526
*
5JVH|1|X|A|2540
5JVH|1|X|U|2541
5JVH|1|X|U|2542
5JVH|1|X|A|2543
5JVH|1|X|A|2544
5JVH|1|X|A|2545
5JVH|1|X|G|2546

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14