J3_5K0Y_001

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5K0Y_001 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1415

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

5K0Y|1|A|A|40
5K0Y|1|A|G|41
*
5K0Y|1|A|C|471
5K0Y|1|A|G|472
5K0Y|1|A|C|473
5K0Y|1|A|A|474
5K0Y|1|A|A|475
5K0Y|1|A|A|476
5K0Y|1|A|U|477
*
5K0Y|1|A|A|502
5K0Y|1|A|G|503
5K0Y|1|A|U|504

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain O

Eukaryotic translation initiation factor 3 subunit G

Chain Q

ribosomal protein uS12