J3_5K0Y_007
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_007 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.171
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5K0Y|1|A|U|1221
5K0Y|1|A|G|1222
5K0Y|1|A|G|1223
5K0Y|1|A|A|1224
*
5K0Y|1|A|U|1525
5K0Y|1|A|A|1526
5K0Y|1|A|C|1527
*
5K0Y|1|A|G|1633
5K0Y|1|A|G|1634
5K0Y|1|A|A|1635
5K0Y|1|A|A|1636
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein uS9
- Chain L
- ribosomal protein uS13
- Chain N
- Transfer RNA; tRNA
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
- Chain R
- ribosomal protein eS19
- Chain U
- ribosomal protein uS7
- Chain W
- ribosomal protein eS25
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