J3_5K0Y_008
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 5K0Y|1|A|G|1252, 5K0Y|1|A|A|1254
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_008 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.2566
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|C|1233
5K0Y|1|A|U|1234
5K0Y|1|A|U|1235
5K0Y|1|A|A|1236
5K0Y|1|A|A|1237
5K0Y|1|A|U|1238
5K0Y|1|A|U|1239
5K0Y|1|A|U|1240
*
5K0Y|1|A|G|1251
5K0Y|1|A|G|1252
5K0Y|1|A|G|1253
5K0Y|1|A|A|1254
5K0Y|1|A|A|1255
5K0Y|1|A|A|1256
5K0Y|1|A|C|1257
5K0Y|1|A|C|1258
5K0Y|1|A|U|1259
5K0Y|1|A|C|1260
5K0Y|1|A|A|1261
5K0Y|1|A|C|1262
*
5K0Y|1|A|G|1511
5K0Y|1|A|G|1512
5K0Y|1|A|C|1513
5K0Y|1|A|U|1514
5K0Y|1|A|G|1515
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein uS14
- Chain L
- ribosomal protein uS13
- Chain h
- ribosomal protein uS10
- Chain n
- ribosomal protein uS19
- Chain p
- ribosomal protein eS31
- Chain t
- ribosomal protein eS10
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