J3_5K0Y_010
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_010 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.2834
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|U|1336
5K0Y|1|A|C|1337
5K0Y|1|A|U|1338
5K0Y|1|A|U|1339
5K0Y|1|A|A|1340
5K0Y|1|A|G|1341
*
5K0Y|1|A|C|1380
5K0Y|1|A|G|1381
5K0Y|1|A|A|1382
5K0Y|1|A|G|1383
5K0Y|1|A|A|1384
5K0Y|1|A|C|1385
5K0Y|1|A|U|1386
*
5K0Y|1|A|A|1476
5K0Y|1|A|G|1477
5K0Y|1|A|C|1478
5K0Y|1|A|A|1479
5K0Y|1|A|A|1480
5K0Y|1|A|U|1481
5K0Y|1|A|A|1482
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein uS9
- Chain J
- ribosomal protein uS14
- Chain c
- ribosomal protein uS5
- Chain e
- ribosomal protein eS17
- Chain g
- ribosomal protein uS3
- Chain h
- ribosomal protein uS10
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