J3_5K0Y_011
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5K0Y_011 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.3015
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5K0Y|1|A|U|1346
5K0Y|1|A|G|1347
*
5K0Y|1|A|U|1356
5K0Y|1|A|G|1357
5K0Y|1|A|U|1358
5K0Y|1|A|C|1359
*
5K0Y|1|A|G|1371
5K0Y|1|A|A|1372
5K0Y|1|A|U|1373
5K0Y|1|A|A|1374
5K0Y|1|A|A|1375
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain c
- ribosomal protein uS5
- Chain e
- ribosomal protein eS17
- Chain f
- ribosomal protein uS2
Coloring options: