J3_5KCR_003

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5KCR|1|1A|U|686, 5KCR|1|1A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3176

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|U|683
5KCR|1|1A|G|684
5KCR|1|1A|A|685
5KCR|1|1A|U|686
5KCR|1|1A|C|687
5KCR|1|1A|U|688
5KCR|1|1A|A|689
*
5KCR|1|1A|U|773
5KCR|1|1A|G|774
5KCR|1|1A|G|775
*
5KCR|1|1A|C|791
5KCR|1|1A|A|792
5KCR|1|1A|A|793
5KCR|1|1A|A|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2