J3_5KCR_005

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.0925

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|G|1055
5KCR|1|1A|G|1056
5KCR|1|1A|A|1057
*
5KCR|1|1A|U|1081
5KCR|1|1A|U|1082
5KCR|1|1A|U|1083
5KCR|1|1A|A|1084
5KCR|1|1A|A|1085
5KCR|1|1A|A|1086
5KCR|1|1A|G|1087
*
5KCR|1|1A|C|1102
5KCR|1|1A|A|1103
5KCR|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1J

50S ribosomal protein L10

Chain 1K

50S ribosomal protein L11