J3_5KCR_007

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5KCR|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.0408

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5KCR|1|1A|C|1306
5KCR|1|1A|A|1307
5KCR|1|1A|A|1308
5KCR|1|1A|G|1309
*
5KCR|1|1A|C|1605
5KCR|1|1A|C|1606
5KCR|1|1A|C|1607
5KCR|1|1A|A|1608
5KCR|1|1A|A|1609
5KCR|1|1A|A|1610
5KCR|1|1A|C|1611
*
5KCR|1|1A|G|1620
5KCR|1|1A|U|1621
5KCR|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34