J3_5KCR_009

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0346

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5KCR|1|1A|C|2091
5KCR|1|1A|U|2092
5KCR|1|1A|G|2093
*
5KCR|1|1A|C|2196
5KCR|1|1A|U|2197
5KCR|1|1A|A|2198
5KCR|1|1A|A|2199
5KCR|1|1A|C|2200
*
5KCR|1|1A|G|2223
5KCR|1|1A|G|2224
5KCR|1|1A|A|2225
5KCR|1|1A|C|2226
5KCR|1|1A|A|2227
5KCR|1|1A|G|2228

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1D

50S ribosomal protein L2

Chain 1I

50S ribosomal protein L9