J3_5KCR_013
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5KCR|1|1A|U|2833, 5KCR|1|1A|A|2835, 5KCR|1|1A|U|2884||A, 5KCR|1|1A|G|2885||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCR_013 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.111
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5KCR|1|1A|G|2812
5KCR|1|1A|A|2813
5KCR|1|1A|A|2814
5KCR|1|1A|C|2815
*
5KCR|1|1A|G|2831
5KCR|1|1A|U|2832
5KCR|1|1A|U|2833
5KCR|1|1A|G|2834
5KCR|1|1A|A|2835
5KCR|1|1A|U|2836
*
5KCR|1|1A|A|2882
5KCR|1|1A|A|2883
5KCR|1|1A|U|2884||A
5KCR|1|1A|G|2885||A
5KCR|1|1A|A|2886||A
5KCR|1|1A|A|2887||A
5KCR|1|1A|C|2888||A
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
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