J3_5KCR_026

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5KCR|1|1A|U|34, 5KCR|1|1A|U|448, 5KCR|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_026 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0304

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|C|32
5KCR|1|1A|C|33
5KCR|1|1A|U|34
5KCR|1|1A|G|35
*
5KCR|1|1A|C|445
5KCR|1|1A|G|446
5KCR|1|1A|A|447
5KCR|1|1A|U|448
5KCR|1|1A|A|449
5KCR|1|1A|G|450
5KCR|1|1A|U|451
5KCR|1|1A|G|452
5KCR|1|1A|A|453
5KCR|1|1A|A|454
5KCR|1|1A|C|455
5KCR|1|1A|C|456
5KCR|1|1A|A|457
5KCR|1|1A|G|458
5KCR|1|1A|U|459
5KCR|1|1A|A|460
5KCR|1|1A|C|461
*
5KCR|1|1A|G|468
5KCR|1|1A|G|469
5KCR|1|1A|A|470
5KCR|1|1A|A|471
5KCR|1|1A|A|472
5KCR|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23