J3_5KCR_035

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCR_035 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0866

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5KCR|1|1a|C|936
5KCR|1|1a|A|937
5KCR|1|1a|A|938
5KCR|1|1a|G|939
*
5KCR|1|1a|C|1344
5KCR|1|1a|U|1345
5KCR|1|1a|A|1346
5KCR|1|1a|G|1347
5KCR|1|1a|U|1348
5KCR|1|1a|A|1349
5KCR|1|1a|A|1350
*
5KCR|1|1a|U|1372
5KCR|1|1a|G|1373
5KCR|1|1a|A|1374
5KCR|1|1a|A|1375
5KCR|1|1a|U|1376
5KCR|1|1a|A|1377
5KCR|1|1a|C|1378
5KCR|1|1a|G|1379

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9