J3_5KCR_037
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5KCR|1|1a|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCR_037 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.139
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5KCR|1|1a|U|1116
5KCR|1|1a|A|1117
5KCR|1|1a|U|1118
*
5KCR|1|1a|A|1155
5KCR|1|1a|G|1156
5KCR|1|1a|A|1157
5KCR|1|1a|C|1158
5KCR|1|1a|U|1159
5KCR|1|1a|G|1160
5KCR|1|1a|C|1161
*
5KCR|1|1a|G|1175
5KCR|1|1a|A|1176
5KCR|1|1a|G|1177
5KCR|1|1a|G|1178
5KCR|1|1a|A|1179
5KCR|1|1a|A|1180
5KCR|1|1a|G|1181
5KCR|1|1a|G|1182
5KCR|1|1a|U|1183
5KCR|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14
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