J3_5KCS_030
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5KCS|1|1a|C|48, 5KCS|1|1a|A|50, 5KCS|1|1a|A|51
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCS_030 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1361
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5KCS|1|1a|G|46
5KCS|1|1a|C|47
5KCS|1|1a|C|48
5KCS|1|1a|U|49
5KCS|1|1a|A|50
5KCS|1|1a|A|51
5KCS|1|1a|C|52
*
5KCS|1|1a|G|359
5KCS|1|1a|G|360
5KCS|1|1a|G|361
5KCS|1|1a|G|362
5KCS|1|1a|A|363
5KCS|1|1a|A|364
5KCS|1|1a|U|365
5KCS|1|1a|A|366
5KCS|1|1a|U|367
*
5KCS|1|1a|A|393
5KCS|1|1a|G|394
5KCS|1|1a|C|395
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
- Chain 1w
- Tetracycline resistance protein TetM from transposon Tn916
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