J3_5KPS_022

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPS_022 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1153

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5KPS|1|28|C|2091
5KPS|1|28|U|2092
5KPS|1|28|G|2093
*
5KPS|1|28|C|2196
5KPS|1|28|U|2197
5KPS|1|28|A|2198
5KPS|1|28|A|2199
5KPS|1|28|C|2200
*
5KPS|1|28|G|2223
5KPS|1|28|G|2224
5KPS|1|28|A|2225
5KPS|1|28|C|2226
5KPS|1|28|A|2227
5KPS|1|28|G|2228

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28