3D structure

PDB id
5KPS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
5KPS|1|28|U|34, 5KPS|1|28|U|448, 5KPS|1|28|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5KPS_035 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1207
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5KPS|1|28|C|32
5KPS|1|28|C|33
5KPS|1|28|U|34
5KPS|1|28|G|35
*
5KPS|1|28|C|445
5KPS|1|28|G|446
5KPS|1|28|A|447
5KPS|1|28|U|448
5KPS|1|28|A|449
5KPS|1|28|G|450
5KPS|1|28|U|451
5KPS|1|28|G|452
5KPS|1|28|A|453
5KPS|1|28|A|454
5KPS|1|28|C|455
5KPS|1|28|C|456
5KPS|1|28|A|457
5KPS|1|28|G|458
5KPS|1|28|U|459
5KPS|1|28|A|460
5KPS|1|28|C|461
*
5KPS|1|28|G|468
5KPS|1|28|G|469
5KPS|1|28|A|470
5KPS|1|28|A|471
5KPS|1|28|A|472
5KPS|1|28|G|473

Current chains

Chain 28
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L34
Chain D
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23

Coloring options:


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