J3_5KPS_035
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5KPS|1|28|U|34, 5KPS|1|28|U|448, 5KPS|1|28|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KPS_035 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1207
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5KPS|1|28|C|32
5KPS|1|28|C|33
5KPS|1|28|U|34
5KPS|1|28|G|35
*
5KPS|1|28|C|445
5KPS|1|28|G|446
5KPS|1|28|A|447
5KPS|1|28|U|448
5KPS|1|28|A|449
5KPS|1|28|G|450
5KPS|1|28|U|451
5KPS|1|28|G|452
5KPS|1|28|A|453
5KPS|1|28|A|454
5KPS|1|28|C|455
5KPS|1|28|C|456
5KPS|1|28|A|457
5KPS|1|28|G|458
5KPS|1|28|U|459
5KPS|1|28|A|460
5KPS|1|28|C|461
*
5KPS|1|28|G|468
5KPS|1|28|G|469
5KPS|1|28|A|470
5KPS|1|28|A|471
5KPS|1|28|A|472
5KPS|1|28|G|473
Current chains
- Chain 28
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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