J3_5KPV_013

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5KPV|1|26|U|1240, 5KPV|1|26|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPV_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1788

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

5KPV|1|26|C|1237
5KPV|1|26|A|1238
5KPV|1|26|A|1239
5KPV|1|26|U|1240
5KPV|1|26|G|1241
*
5KPV|1|26|C|1296
5KPV|1|26|G|1297
5KPV|1|26|U|1298
5KPV|1|26|A|1299
5KPV|1|26|G|1300
5KPV|1|26|U|1301
5KPV|1|26|C|1302
5KPV|1|26|C|1303
*
5KPV|1|26|G|1334
5KPV|1|26|U|1335
5KPV|1|26|C|1336
5KPV|1|26|G|1337

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S7

Chain 17

30S ribosomal protein S13