J3_5KPV_020

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5KPV|1|27|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPV_020 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1591

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5KPV|1|27|C|1306
5KPV|1|27|A|1307
5KPV|1|27|A|1308
5KPV|1|27|G|1309
*
5KPV|1|27|C|1605
5KPV|1|27|C|1606
5KPV|1|27|C|1607
5KPV|1|27|A|1608
5KPV|1|27|A|1609
5KPV|1|27|A|1610
5KPV|1|27|C|1611
*
5KPV|1|27|G|1620
5KPV|1|27|U|1621
5KPV|1|27|G|1622

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34