J3_5KPV_028

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5KPV|1|26|C|48, 5KPV|1|26|A|50, 5KPV|1|26|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPV_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1324

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPV|1|26|G|46
5KPV|1|26|C|47
5KPV|1|26|C|48
5KPV|1|26|U|49
5KPV|1|26|A|50
5KPV|1|26|A|51
5KPV|1|26|C|52
*
5KPV|1|26|G|359
5KPV|1|26|G|360
5KPV|1|26|G|361
5KPV|1|26|G|362
5KPV|1|26|A|363
5KPV|1|26|A|364
5KPV|1|26|U|365
5KPV|1|26|A|366
5KPV|1|26|U|367
*
5KPV|1|26|A|393
5KPV|1|26|G|394
5KPV|1|26|C|395

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 20

30S ribosomal protein S16

Chain 33

GTP pyrophosphokinase