J3_5KPW_004

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5KPW|1|26|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.115

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5KPW|1|26|C|826
5KPW|1|26|U|827
5KPW|1|26|U|828
5KPW|1|26|G|829
*
5KPW|1|26|C|857
5KPW|1|26|G|858
5KPW|1|26|G|859
5KPW|1|26|A|860
5KPW|1|26|G|861
*
5KPW|1|26|C|868
5KPW|1|26|G|869
5KPW|1|26|U|870
5KPW|1|26|U|871
5KPW|1|26|A|872
5KPW|1|26|A|873
5KPW|1|26|G|874

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S8

Chain 25

30S ribosomal protein S21

Chain 6

30S ribosomal protein S2