J3_5KPW_012

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5KPW|1|26|U|1240, 5KPW|1|26|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_012 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.174

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5KPW|1|26|C|1237
5KPW|1|26|A|1238
5KPW|1|26|A|1239
5KPW|1|26|U|1240
5KPW|1|26|G|1241
*
5KPW|1|26|C|1296
5KPW|1|26|G|1297
5KPW|1|26|U|1298
5KPW|1|26|A|1299
5KPW|1|26|G|1300
5KPW|1|26|U|1301
5KPW|1|26|C|1302
5KPW|1|26|C|1303
*
5KPW|1|26|G|1334
5KPW|1|26|U|1335
5KPW|1|26|C|1336
5KPW|1|26|G|1337

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S7

Chain 17

30S ribosomal protein S13