J3_5LI0_011
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUC*GUUG*CAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 5LI0|1|A|A|2545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LI0_011 not in the Motif Atlas
- Geometric match to J3_4V9F_009
- Geometric discrepancy: 0.2027
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5LI0|1|A|C|2544
5LI0|1|A|A|2545
5LI0|1|A|U|2546
5LI0|1|A|C|2547
*
5LI0|1|A|G|2572
5LI0|1|A|U|2573
5LI0|1|A|U|2574
5LI0|1|A|G|2575
*
5LI0|1|A|C|2587
5LI0|1|A|A|2588
5LI0|1|A|U|2589
5LI0|1|A|U|2590
5LI0|1|A|A|2591
5LI0|1|A|A|2592
5LI0|1|A|A|2593
5LI0|1|A|G|2594
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L14
Coloring options: