J3_5LI0_011

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

5LI0|1|A|A|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_011 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2027

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

5LI0|1|A|C|2544
5LI0|1|A|A|2545
5LI0|1|A|U|2546
5LI0|1|A|C|2547
*
5LI0|1|A|G|2572
5LI0|1|A|U|2573
5LI0|1|A|U|2574
5LI0|1|A|G|2575
*
5LI0|1|A|C|2587
5LI0|1|A|A|2588
5LI0|1|A|U|2589
5LI0|1|A|U|2590
5LI0|1|A|A|2591
5LI0|1|A|A|2592
5LI0|1|A|A|2593
5LI0|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L14