3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAUC*GUUG*CAUUAAAG
Length
16 nucleotides
Bulged bases
5LI0|1|A|A|2545
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LI0_011 not in the Motif Atlas
Geometric match to J3_4V9F_009
Geometric discrepancy: 0.2027
The information below is about J3_4V9F_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69441.1
Basepair signature
cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
1

Unit IDs

5LI0|1|A|C|2544
5LI0|1|A|A|2545
5LI0|1|A|U|2546
5LI0|1|A|C|2547
*
5LI0|1|A|G|2572
5LI0|1|A|U|2573
5LI0|1|A|U|2574
5LI0|1|A|G|2575
*
5LI0|1|A|C|2587
5LI0|1|A|A|2588
5LI0|1|A|U|2589
5LI0|1|A|U|2590
5LI0|1|A|A|2591
5LI0|1|A|A|2592
5LI0|1|A|A|2593
5LI0|1|A|G|2594

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L14

Coloring options:


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