3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
5LI0|1|A|U|494, 5LI0|1|A|C|502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LI0_026 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.1784
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5LI0|1|A|C|32
5LI0|1|A|U|33
5LI0|1|A|U|34
5LI0|1|A|G|35
*
5LI0|1|A|C|491
5LI0|1|A|G|492
5LI0|1|A|A|493
5LI0|1|A|U|494
5LI0|1|A|A|495
5LI0|1|A|G|496
5LI0|1|A|U|497
5LI0|1|A|G|498
5LI0|1|A|A|499
5LI0|1|A|A|500
5LI0|1|A|C|501
5LI0|1|A|C|502
5LI0|1|A|A|503
5LI0|1|A|G|504
5LI0|1|A|U|505
5LI0|1|A|A|506
5LI0|1|A|C|507
*
5LI0|1|A|G|514
5LI0|1|A|G|515
5LI0|1|A|A|516
5LI0|1|A|A|517
5LI0|1|A|A|518
5LI0|1|A|G|519

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain F
50S ribosomal protein L4
Chain T
50S ribosomal protein L20
Chain W
50S ribosomal protein L23

Coloring options:


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