J3_5LKS_011

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LKS_011 not in the Motif Atlas

Geometric match to J3_9DFE_014

Geometric discrepancy: 0.362

The information below is about J3_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5LKS|1|L5|C|3937
5LKS|1|L5|G|3938
5LKS|1|L5|G|3939
*
5LKS|1|L5|C|4074
5LKS|1|L5|U|4075
5LKS|1|L5|G|4076
5LKS|1|L5|A|4077
5LKS|1|L5|C|4078
*
5LKS|1|L5|G|4168
5LKS|1|L5|G|4169
5LKS|1|L5|A|4170
5LKS|1|L5|C|4171
5LKS|1|L5|A|4172
5LKS|1|L5|G|4173

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15