3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUC*GAG*CAAAAG
Length
12 nucleotides
Bulged bases
5LKS|1|L5|A|4280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LKS_012 not in the Motif Atlas
Homologous match to J3_8P9A_062
Geometric discrepancy: 0.1972
The information below is about J3_8P9A_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_05327.1
Basepair signature
cWW-tWH-tWW-cWW-F-cWW
Number of instances in this motif group
10

Unit IDs

5LKS|1|L5|C|4241
5LKS|1|L5|U|4242
5LKS|1|L5|C|4243
*
5LKS|1|L5|G|4267
5LKS|1|L5|A|4268
5LKS|1|L5|G|4269
*
5LKS|1|L5|C|4278
5LKS|1|L5|A|4279
5LKS|1|L5|A|4280
5LKS|1|L5|A|4281
5LKS|1|L5|A|4282
5LKS|1|L5|G|4283

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
60S ribosomal protein L5
Chain LJ
60S ribosomal protein L11
Chain LT
60S ribosomal protein L21

Coloring options:


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