J3_5LKS_055

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|S2|C|1218
5LKS|1|S2|C|1219
5LKS|1|S2|A|1220
5LKS|1|S2|G|1221
*
5LKS|1|S2|C|1645
5LKS|1|S2|C|1646
5LKS|1|S2|A|1647
5LKS|1|S2|G|1648
5LKS|1|S2|U|1649
5LKS|1|S2|A|1650
5LKS|1|S2|A|1651
*
5LKS|1|S2|U|1673
5LKS|1|S2|G|1674
5LKS|1|S2|A|1675
5LKS|1|S2|U|1676
5LKS|1|S2|U|1677
5LKS|1|S2|A|1678
5LKS|1|S2|A|1679
5LKS|1|S2|G|1680

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain SR

40S ribosomal protein S17

Chain Sc

40S ribosomal protein S28