J3_5LMO_004
3D structure
- PDB id
- 5LMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5LMO|1|A|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LMO_004 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.1554
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5LMO|1|A|C|826
5LMO|1|A|U|827
5LMO|1|A|A|828
5LMO|1|A|G|829
*
5LMO|1|A|C|857
5LMO|1|A|G|858
5LMO|1|A|A|859
5LMO|1|A|A|860
5LMO|1|A|G|861
*
5LMO|1|A|C|868
5LMO|1|A|G|869
5LMO|1|A|U|870
5LMO|1|A|U|871
5LMO|1|A|A|872
5LMO|1|A|A|873
5LMO|1|A|G|874
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S8
Coloring options: