J3_5LMP_004

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5LMP|1|A|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMP_004 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.1488

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5LMP|1|A|C|826
5LMP|1|A|U|827
5LMP|1|A|A|828
5LMP|1|A|G|829
*
5LMP|1|A|C|857
5LMP|1|A|G|858
5LMP|1|A|A|859
5LMP|1|A|A|860
5LMP|1|A|G|861
*
5LMP|1|A|C|868
5LMP|1|A|G|869
5LMP|1|A|U|870
5LMP|1|A|U|871
5LMP|1|A|A|872
5LMP|1|A|A|873
5LMP|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8