J3_5LMP_008

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5LMP|1|A|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMP_008 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.157

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5LMP|1|A|C|990
5LMP|1|A|U|991
5LMP|1|A|U|992
5LMP|1|A|G|993
5LMP|1|A|A|994
5LMP|1|A|C|995
5LMP|1|A|A|996
5LMP|1|A|U|997
*
5LMP|1|A|A|1044
5LMP|1|A|C|1045
5LMP|1|A|A|1046
5LMP|1|A|G|1047
*
5LMP|1|A|C|1210
5LMP|1|A|U|1211
5LMP|1|A|U|1212
5LMP|1|A|A|1213
5LMP|1|A|C|1214
5LMP|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z