J3_5LMQ_004

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5LMQ|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMQ_004 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.1425

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5LMQ|1|A|C|826
5LMQ|1|A|U|827
5LMQ|1|A|A|828
5LMQ|1|A|G|829
*
5LMQ|1|A|C|857
5LMQ|1|A|G|858
5LMQ|1|A|A|859
5LMQ|1|A|A|860
5LMQ|1|A|G|861
*
5LMQ|1|A|C|868
5LMQ|1|A|G|869
5LMQ|1|A|U|870
5LMQ|1|A|U|871
5LMQ|1|A|A|872
5LMQ|1|A|A|873
5LMQ|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8