3D structure

PDB id
5LMQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
5LMQ|1|A|U|1240, 5LMQ|1|A|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LMQ_013 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1214
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03192.1
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
Number of instances in this motif group
5

Unit IDs

5LMQ|1|A|C|1237
5LMQ|1|A|A|1238
5LMQ|1|A|A|1239
5LMQ|1|A|U|1240
5LMQ|1|A|G|1241
*
5LMQ|1|A|C|1296
5LMQ|1|A|C|1297
5LMQ|1|A|C|1298
5LMQ|1|A|A|1299
5LMQ|1|A|G|1300
5LMQ|1|A|U|1301
5LMQ|1|A|U|1302
5LMQ|1|A|C|1303
*
5LMQ|1|A|G|1334
5LMQ|1|A|C|1335
5LMQ|1|A|C|1336
5LMQ|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13
Chain V
30S ribosomal protein Thx

Coloring options:


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