J3_5LMQ_013
3D structure
- PDB id
- 5LMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 5LMQ|1|A|U|1240, 5LMQ|1|A|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LMQ_013 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1214
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
5LMQ|1|A|C|1237
5LMQ|1|A|A|1238
5LMQ|1|A|A|1239
5LMQ|1|A|U|1240
5LMQ|1|A|G|1241
*
5LMQ|1|A|C|1296
5LMQ|1|A|C|1297
5LMQ|1|A|C|1298
5LMQ|1|A|A|1299
5LMQ|1|A|G|1300
5LMQ|1|A|U|1301
5LMQ|1|A|U|1302
5LMQ|1|A|C|1303
*
5LMQ|1|A|G|1334
5LMQ|1|A|C|1335
5LMQ|1|A|C|1336
5LMQ|1|A|G|1337
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
- Chain V
- 30S ribosomal protein Thx
Coloring options: