J3_5LMQ_016

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5LMQ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMQ_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1893

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5LMQ|1|A|C|990
5LMQ|1|A|U|991
5LMQ|1|A|U|992
5LMQ|1|A|G|993
5LMQ|1|A|A|994
5LMQ|1|A|C|995
5LMQ|1|A|A|996
5LMQ|1|A|U|997
*
5LMQ|1|A|A|1044
5LMQ|1|A|C|1045
5LMQ|1|A|A|1046
5LMQ|1|A|G|1047
*
5LMQ|1|A|C|1210
5LMQ|1|A|U|1211
5LMQ|1|A|U|1212
5LMQ|1|A|A|1213
5LMQ|1|A|C|1214
5LMQ|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z