J3_5LMS_008

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5LMS|1|A|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMS_008 not in the Motif Atlas

Geometric match to J3_4LFB_016

Geometric discrepancy: 0.128

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5LMS|1|A|C|990
5LMS|1|A|U|991
5LMS|1|A|U|992
5LMS|1|A|G|993
5LMS|1|A|A|994
5LMS|1|A|C|995
5LMS|1|A|A|996
5LMS|1|A|U|997
*
5LMS|1|A|A|1044
5LMS|1|A|C|1045
5LMS|1|A|A|1046
5LMS|1|A|G|1047
*
5LMS|1|A|C|1210
5LMS|1|A|U|1211
5LMS|1|A|U|1212
5LMS|1|A|A|1213
5LMS|1|A|C|1214
5LMS|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z