J3_5LMU_004

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5LMU|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMU_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1051

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5LMU|1|A|C|826
5LMU|1|A|U|827
5LMU|1|A|A|828
5LMU|1|A|G|829
*
5LMU|1|A|C|857
5LMU|1|A|G|858
5LMU|1|A|A|859
5LMU|1|A|A|860
5LMU|1|A|G|861
*
5LMU|1|A|C|868
5LMU|1|A|G|869
5LMU|1|A|U|870
5LMU|1|A|U|871
5LMU|1|A|A|872
5LMU|1|A|A|873
5LMU|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8