J3_5LMV_005

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMV_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1115

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5LMV|1|A|C|936
5LMV|1|A|A|937
5LMV|1|A|A|938
5LMV|1|A|G|939
*
5LMV|1|A|C|1344
5LMV|1|A|U|1345
5LMV|1|A|A|1346
5LMV|1|A|G|1347
5LMV|1|A|U|1348
5LMV|1|A|A|1349
5LMV|1|A|A|1350
*
5LMV|1|A|U|1372
5LMV|1|A|G|1373
5LMV|1|A|A|1374
5LMV|1|A|A|1375
5LMV|1|A|U|1376
5LMV|1|A|A|1377
5LMV|1|A|C|1378
5LMV|1|A|G|1379

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9