J3_5LYB_024

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5LYB|1|2|A|1217, 5LYB|1|2|G|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LYB_024 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1045

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5LYB|1|2|C|1215
5LYB|1|2|C|1216
5LYB|1|2|A|1217
5LYB|1|2|G|1218
5LYB|1|2|A|1219
5LYB|1|2|C|1220
*
5LYB|1|2|G|1263
5LYB|1|2|G|1264
5LYB|1|2|G|1265
5LYB|1|2|U|1266
5LYB|1|2|G|1267
*
5LYB|1|2|U|1442
5LYB|1|2|U|1443
5LYB|1|2|A|1444
5LYB|1|2|G|1445
5LYB|1|2|A|1446
5LYB|1|2|C|1447
5LYB|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C0

40S ribosomal protein S10-A,40S ribosomal protein S10-A,40S Ribosomal Protein S10-A

Chain D9

40S ribosomal protein S29-A

Chain E1

Ubiquitin-40S ribosomal protein S31