J3_5LYB_037
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 5LYB|1|5|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LYB_037 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0698
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
5LYB|1|5|U|1479
5LYB|1|5|G|1480
5LYB|1|5|A|1481
5LYB|1|5|A|1482
5LYB|1|5|G|1483
5LYB|1|5|U|1484
5LYB|1|5|G|1485
*
5LYB|1|5|C|1857
5LYB|1|5|A|1858
5LYB|1|5|A|1859
*
5LYB|1|5|U|1871
5LYB|1|5|C|1872
5LYB|1|5|U|1873
5LYB|1|5|A|1874
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain m9
- 60S ribosomal protein L19-A
- Chain o4
- 60S ribosomal protein L34-A
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