J3_5LYB_038
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 5LYB|1|5|U|1840, 5LYB|1|5|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LYB_038 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0604
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LYB|1|5|G|1488
5LYB|1|5|A|1489
5LYB|1|5|A|1490
5LYB|1|5|A|1491
*
5LYB|1|5|U|1837
5LYB|1|5|G|1838
5LYB|1|5|A|1839
5LYB|1|5|U|1840
5LYB|1|5|A|1841
5LYB|1|5|A|1842
5LYB|1|5|C|1843
*
5LYB|1|5|G|1852
5LYB|1|5|U|1853
5LYB|1|5|C|1854
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain o4
- 60S ribosomal protein L34-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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