J3_5LZB_022

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGUCAG*CGCAACC*GAUGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZB_022 not in the Motif Atlas

Homologous match to J3_5J7L_008

Geometric discrepancy: 0.1246

The information below is about J3_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZB|1|a|C|1063
5LZB|1|a|G|1064
5LZB|1|a|U|1065
5LZB|1|a|C|1066
5LZB|1|a|A|1067
5LZB|1|a|G|1068
*
5LZB|1|a|C|1107
5LZB|1|a|G|1108
5LZB|1|a|C|1109
5LZB|1|a|A|1110
5LZB|1|a|A|1111
5LZB|1|a|C|1112
5LZB|1|a|C|1113
*
5LZB|1|a|G|1187
5LZB|1|a|A|1188
5LZB|1|a|U|1189
5LZB|1|a|G|1190
5LZB|1|a|A|1191
5LZB|1|a|C|1192
5LZB|1|a|G|1193

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain e

30S ribosomal protein S5

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14