J3_5LZB_028

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5LZB|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZB_028 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1408

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZB|1|A|G|297
5LZB|1|A|G|298
5LZB|1|A|A|299
5LZB|1|A|A|300
5LZB|1|A|G|301
*
5LZB|1|A|C|316
5LZB|1|A|G|317
5LZB|1|A|C|318
5LZB|1|A|G|319
5LZB|1|A|A|320
5LZB|1|A|U|321
5LZB|1|A|A|322
5LZB|1|A|C|323
5LZB|1|A|A|324
5LZB|1|A|G|325
*
5LZB|1|A|C|337
5LZB|1|A|G|338
5LZB|1|A|U|339
5LZB|1|A|A|340
5LZB|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24