J3_5LZB_036

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

5LZB|1|a|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZB_036 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1885

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5LZB|1|a|U|1073
5LZB|1|a|G|1074
*
5LZB|1|a|U|1083
5LZB|1|a|G|1084
5LZB|1|a|U|1085
5LZB|1|a|U|1086
*
5LZB|1|a|G|1099
5LZB|1|a|C|1100
5LZB|1|a|A|1101
5LZB|1|a|A|1102

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5

Chain u

30S ribosomal protein S21