J3_5LZC_005

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

5LZC|1|A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZC_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1354

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5LZC|1|A|C|1298
5LZC|1|A|G|1299
5LZC|1|A|G|1300
5LZC|1|A|A|1301
5LZC|1|A|A|1302
5LZC|1|A|G|1303
*
5LZC|1|A|C|1625
5LZC|1|A|A|1626
5LZC|1|A|G|1627
*
5LZC|1|A|C|1639
5LZC|1|A|A|1640
5LZC|1|A|A|1641
5LZC|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains