J3_5LZE_003

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5LZE|1|A|U|686, 5LZE|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZE_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1941

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|U|683
5LZE|1|A|G|684
5LZE|1|A|A|685
5LZE|1|A|U|686
5LZE|1|A|C|687
5LZE|1|A|U|688
5LZE|1|A|A|689
*
5LZE|1|A|U|773
5LZE|1|A|G|774
5LZE|1|A|G|775
*
5LZE|1|A|C|791
5LZE|1|A|A|792
5LZE|1|A|A|793
5LZE|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2