3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZE_017 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0779
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

5LZE|1|a|C|936
5LZE|1|a|A|937
5LZE|1|a|A|938
5LZE|1|a|G|939
*
5LZE|1|a|C|1344
5LZE|1|a|U|1345
5LZE|1|a|A|1346
5LZE|1|a|G|1347
5LZE|1|a|U|1348
5LZE|1|a|A|1349
5LZE|1|a|A|1350
*
5LZE|1|a|U|1372
5LZE|1|a|G|1373
5LZE|1|a|A|1374
5LZE|1|a|A|1375
5LZE|1|a|U|1376
5LZE|1|a|A|1377
5LZE|1|a|C|1378
5LZE|1|a|G|1379

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9

Coloring options:


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