J3_5LZE_027

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5LZE|1|A|U|34, 5LZE|1|A|U|448, 5LZE|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZE_027 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1144

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|C|32
5LZE|1|A|C|33
5LZE|1|A|U|34
5LZE|1|A|G|35
*
5LZE|1|A|C|445
5LZE|1|A|G|446
5LZE|1|A|A|447
5LZE|1|A|U|448
5LZE|1|A|A|449
5LZE|1|A|G|450
5LZE|1|A|U|451
5LZE|1|A|G|452
5LZE|1|A|A|453
5LZE|1|A|A|454
5LZE|1|A|C|455
5LZE|1|A|C|456
5LZE|1|A|A|457
5LZE|1|A|G|458
5LZE|1|A|U|459
5LZE|1|A|A|460
5LZE|1|A|C|461
*
5LZE|1|A|G|468
5LZE|1|A|G|469
5LZE|1|A|A|470
5LZE|1|A|A|471
5LZE|1|A|A|472
5LZE|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23